For the sources of data see the table below in combination with the repository's readme and the notebooks.

In [1]:
import sys

sys.path.append('..')
from covid19_inference import multi_country_plotting as cov19mcp

cov19mcp.plotly_violins_all_available_lambda(distances=10)

WARNING  [theano.tensor.blas] Using NumPy C-API based implementation for BLAS functions.

Violin plots of $\lambda -\mu$ for each of the countries / datasets found

10 days before and 10 days after lockdown

Country Dataset lockdown date lockdown type data retrieved
Austria JHU 16/03/2020 confinement 19/05/2020 16:11
Netherlands JHU 23/03/2020 social distancing measures
Sweden JHU 24/03/2020 restaurant closures 15/05/2020 10:56
France hosp 17/03/2020 confinement 16/05/2020 18:43
France new_lab 17/03/2020 confinement 16/05/2020 14:22
France JHU 17/03/2020 confinement 16/05/2020 14:49
Italy new_gvt 10/03/2020 confinement
Italy JHU 10/03/2020 confinement
Abbreviation Meaning
JHU Data from Johns Hopkins university
new_gvt New cases according to government data of the respective country
hosp New hospitalisations according to government data of the respective country
new_lab France-specific, positive tests of a part of the laboratories (laboratoires de ville)

For the links to the sources, see the readme of the repository.

Data has been pre-processed to include only data between 0.05 and 0.95 quantiles. The following plots are interactive, by clicking on a legend item, the corresponding plot will disappear. Double-click to isolate.

In [2]:
cov19mcp.plotly_violins_all_available_ratio(distances=10)

Violin plots of the ratio of $\lambda$ for each of the countries / datasets found

10 days after and 10 days before lockdown

Country Dataset lockdown date lockdown type data retrieved
Austria JHU 16/03/2020 confinement 19/05/2020 16:11
Netherlands JHU 23/03/2020 social distancing measures
Sweden JHU 24/03/2020 restaurant closures 15/05/2020 10:56
France hosp 17/03/2020 confinement 16/05/2020 18:43
France new_lab 17/03/2020 confinement 16/05/2020 14:22
France JHU 17/03/2020 confinement 16/05/2020 14:49
Italy new_gvt 10/03/2020 confinement
Italy JHU 10/03/2020 confinement
Abbreviation Meaning
JHU Data from Johns Hopkins university
new_gvt New cases according to government data of the respective country
hosp New hospitalisations according to government data of the respective country
new_lab France-specific, positive tests of a part of the laboratories (laboratoires de ville)

For the links to the sources, see the readme of the repository.

After calculating the ratio, only the ratios between the 0.05 and 0.95 quantiles are plotted. The following plots are interactive, by clicking on a legend item, the corresponding plot will disappear. Double-click to isolate.

View html file on GitHub page to actually view the plots